Made another scoping:
Yellow is guitar input, light blue is grid on second stage, purple is phase inverter input and dark blue is across ot seconds.
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It seems that there's a spike that gets clipped by the powertubes, every time the guitar signal goes straight from negative to positive - I guess that makes sense - this is where the signal "moves" the furthest, so that gives the spike. I'm not sure why the guitar signal looks like it does though, but it looks similar with the other guitar I tried. (the second guitar is a split humbucker).
The scope measures the input to around 220 mv pp.
I tried to make a similar sine wave with that amplitude and this gave me this result:
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From what I can tell, the guitar signal gives the biggest swing from negative to positive, but every swing from positive to negative sort of pauses in the middle.... this sort of explains why there's clipping on only one side.
But does this mean the guitar is doing something wrong? I'm not sure about that, since it looks very similar with my other guitar:
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